PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G291900.1
Common NameB456_011G291900, LOC105778485
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 303aa    MW: 32763 Da    PI: 7.5776
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G291900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1851100255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f +aeeAa+a+++a+  l+g
  Gorai.011G291900.1  51 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFASAEEAARAYDRAAIVLYG 100
                         59****999.**********954...5*********************988776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-3251108No hitNo description
Gene3DG3DSA:3.30.730.105.0E-2951108IPR001471AP2/ERF domain
PfamPF008471.7E-1251100IPR001471AP2/ERF domain
PROSITE profilePS5103222.33951108IPR001471AP2/ERF domain
SMARTSM003801.2E-3751114IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2151109IPR016177DNA-binding domain
PRINTSPR003674.5E-105263IPR001471AP2/ERF domain
PRINTSPR003674.5E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDQNHDQSSL SHLPQEEPTA TTTTTTTTTS DTTSTTRKCK GKGGPDNNKF RYRGVRQRSW  60
GKWVAEIREP RKRTRKWLGT FASAEEAARA YDRAAIVLYG SKAQLNLQPS ISSSSSSSSS  120
RSSSSSSSSS TTQSLRPLLP RPSGFSFSYS NPTSYQASLM AAAASNGGSG GGYSRFMPYG  180
VYQQQPMVYP SMMQNPLQIV QSEPSLVVDP TVTTTSYMNN PNPQQVQQHD QQGALYDDVN  240
SLVGSVGSSL SLSGQTSVAP VVSDPGLTVG PGSPSIWPLT TDDEYPPPFI WDYMDPNFIF  300
DF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1752107359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1752113668ATERF1
3gcc_A4e-1752113668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6145431e-177JX614543.1 Gossypium hirsutum clone NBRI_GE58009 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457656.10.0PREDICTED: ethylene-responsive transcription factor ABI4
SwissprotA0MES84e-51ABI4_ARATH; Ethylene-responsive transcription factor ABI4
TrEMBLA0A0D2UZ770.0A0A0D2UZ77_G
STRINGVIT_13s0067g01400.t014e-73(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.17e-32ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]